UZ_refs
References from Statistical Genetics: Gene Mapping Through Linkage and Association
A-C D-F G-K L-N O-R S-T U-Z Online Material
Uimari, P., Kontkanen, O., Visscher, M., Pirskanen, M., Fuentes, R., & Salonen, J. T. (2005). Genome-wide linkage disequilibrium from 100,000 SNPs in the East Finland founder population. Twin Res Hum Genet, 8(3), 185-197 Abstract
van den Berg, S. M., Beem, L., & Boomsma, D. I. (2006). Fitting genetic models using Markov Chain Monte Carlo algorithms with BUGS. Twin Res Hum Genet, 9(3), 334-342 Abstract
van den Berg, S. M., Setiawan, A., Bartels, M., Polderman, T. J., van der Vaart, A. W., & Boomsma, D. I. (2006). Individual differences in puberty onset in girls: Bayesian estimation of heritabilities and genetic correlations. Behav Genet, 36(2), 261-270 Abstract
van den Oord, E. J., Simonoff, E., Eaves, L. J., Pickles, A., Silberg, J., & Maes, H. (2000). An evaluation of different approaches for behavior genetic analyses with psychiatric symptom scores. Behav Genet, 30(1), 1-18 Abstract
van den Oord, E. J., & Neale, B. M. (2004). Will haplotype maps be useful for finding genes? Mol Psychiatry, 9(3), 227-236 Abstract
van den Oord, E. J. C. G. (1999). A comparison between different designs and tests to detects QTLs in association studies. Behav. Genet., 29, 245-256
Vandenberg, S. G. (1965). Innate Abilities, One or Many?a New Method and Some Results. Acta Genet Med Gemellol (Roma), 14, 41-47 Abstract
Vandenberg, S. G. (1965). Multivariate analysis of twin differences. In Vandenberg, S. G. (Ed.), Methods and Goals in Human Behavior Genetics (p29-44).
Varmuza, S., & Mann, M. (1994). Genomic imprinting--defusing the ovarian time bomb. Trends Genet, 10(4), 118-123 Abstract
Venables, W. N., Smith, D. M., & the R Development Core Team. (2001). An Introduction to R.. Bristol: Network Theory Limited.
Venter, J. C., Adams, M. D., Myers, E. W., Li, W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., Gocayne, J. D., Amanatides, P., Ballew, R. M., Huson, D. H., Wortman, J. R., Zhang, Q., Kodira, C. D., Zheng, X. H., Chen, L., Skupski, M., Subramanian, G., Thomas, D., Zhang, J., Gabor Miklos, G. L., Nelson, C., Broder, S., Clark, A. G., Nadeau, J., McKusick, V. A., Zinder, N., Levine, A. J., Roberts, R. J., Simon, M., Slayman, C., Hunkapiller, M., Bolanos, R., Delcher, A., Dew, I., Fasulo, D., Flanigan, M., Florea, L., Halpern, A., Hannenhalli, S., Kravitz, S., Levy, S., Mobarry, C., Reinert, K., Remington, K., Abu-Threideh, J., Beasley, E., Biddick, K., Bonazzi, V., Brandon, R., Cargill, M., Chandramouliswaran, I., Charlab, R., Chaturvedi, K., Deng, Z., Di Francesco, V., Dunn, P., Eilbeck, K., Evangelista, C., Gabrielian, A. E., Gan, W., Ge, W., Gong, F., Gu, Z., Guan, P., Heiman, T. J., Higgins, M. E., Ji, R. R., Ke, Z., Ketchum, K. A., Lai, Z., Lei, Y., Li, Z., Li, J., Liang, Y., Lin, X., Lu, F., Merkulov, G. V., Milshina, N., Moore, H. M., Naik, A. K., Narayan, V. A., Neelam, B., Nusskern, D., Rusch, D. B., Salzberg, S., Shao, W., Shue, B., Sun, J., Wang, Z., Wang, A., Wang, X., Wang, J., Wei, M., Wides, R., Xiao, C., Yan, C., Yao, A., Ye, J., Zhan, M., Zhang, W., Zhang, H., Zhao, Q., Zheng, L., Zhong, F., Zhong, W., Zhu, S., Zhao, S., Gilbert, D., Baumhueter, S., Spier, G., Carter, C., Cravchik, A., Woodage, T., Ali, F., An, H., Awe, A., Baldwin, D., Baden, H., Barnstead, M., Barrow, I., Beeson, K., Busam, D., Carver, A., Center, A., Cheng, M. L., Curry, L., Danaher, S., Davenport, L., Desilets, R., Dietz, S., Dodson, K., Doup, L., Ferriera, S., Garg, N., Gluecksmann, A., Hart, B., Haynes, J., Haynes, C., Heiner, C., Hladun, S., Hostin, D., Houck, J., Howland, T., Ibegwam, C., Johnson, J., Kalush, F., Kline, L., Koduru, S., Love, A., Mann, F., May, D., McCawley, S., McIntosh, T., McMullen, I., Moy, M., Moy, L., Murphy, B., Nelson, K., Pfannkoch, C., Pratts, E., Puri, V., Qureshi, H., Reardon, M., Rodriguez, R., Rogers, Y. H., Romblad, D., Ruhfel, B., Scott, R., Sitter, C., Smallwood, M., Stewart, E., Strong, R., Suh, E., Thomas, R., Tint, N. N., Tse, S., Vech, C., Wang, G., Wetter, J., Williams, S., Williams, M., Windsor, S., Winn-Deen, E., Wolfe, K., Zaveri, J., Zaveri, K., Abril, J. F., Guigo, R., Campbell, M. J., Sjolander, K. V., Karlak, B., Kejariwal, A., Mi, H., Lazareva, B., Hatton, T., Narechania, A., Diemer, K., Muruganujan, A., Guo, N., Sato, S., Bafna, V., Istrail, S., Lippert, R., Schwartz, R., Walenz, B., Yooseph, S., Allen, D., Basu, A., Baxendale, J., Blick, L., Caminha, M., Carnes-Stine, J., Caulk, P., Chiang, Y. H., Coyne, M., Dahlke, C., Mays, A., Dombroski, M., Donnelly, M., Ely, D., Esparham, S., Fosler, C., Gire, H., Glanowski, S., Glasser, K., Glodek, A., Gorokhov, M., Graham, K., Gropman, B., Harris, M., Heil, J., Henderson, S., Hoover, J., Jennings, D., Jordan, C., Jordan, J., Kasha, J., Kagan, L., Kraft, C., Levitsky, A., Lewis, M., Liu, X., Lopez, J., Ma, D., Majoros, W., McDaniel, J., Murphy, S., Newman, M., Nguyen, T., Nguyen, N., Nodell, M., Pan, S., Peck, J., Peterson, M., Rowe, W., Sanders, R., Scott, J., Simpson, M., Smith, T., Sprague, A., Stockwell, T., Turner, R., Venter, E., Wang, M., Wen, M., Wu, D., Wu, M., Xia, A., Zandieh, A., & Zhu, X. (2001). The sequence of the human genome. Science, 291(5507), 1304-1351 Abstract
Vieland, V. J., Hodge, S. E., & Greenberg, D. A. (1992). Adequacy of single-locus approximations for linkage analyses of oligogenic traits. Genet Epidemiol, 9(1), 45-59 Abstract
Visscher, M., & Hopper, J. L. (2001). Power of regression and maximum likelihood methods to map QTL from sib-pair and DZ twin data. Ann Hum Genet, 65(Pt 6), 583-601 Abstract
Visscher, M. (2006). A note on the asymptotic distribution of likelihood ratio tests to test variance components. Twin Res Hum Genet, 9(4), 490-495 Abstract
Visscher, M., & Duffy, D. L. (2006). The value of relatives with phenotypes but missing genotypes in association studies for quantitative traits. Genet Epidemiol, 30(1), 30-36 Abstract
Visscher, M., Medland, S. E., Ferreira, M. A., Morley, K. I., Zhu, G., Cornes, B. K., Montgomery, G. W., & Martin, N. G. (2006). Assumption-free estimation of heritability from genome-wide identity-by-descent sharing between full siblings. PLoS Genet, 2(3), e41 Abstract
Vogler, G. P., Tang, W., Nelson, T. L., Hofer, S. M., Grant, J. D., Tarantino, L. M., & Fernandez, J. R. (1997). A multivariate model for the analysis of sibship covariance structure using marker information and multiple quantitative traits. Genet Epidemiol, 14(6), 921-926 Abstract
Wall, J. D., & Pritchard, J. K. (2003). Assessing the performance of the haplotype block model of linkage disequilibrium. Am J Hum Genet, 73(3), 502-515 Abstract
Wallace, C., Xue, M. Z., Newhouse, S. J., Marcano, A. C., Onipinla, A. K., Burke, B., Gungadoo, J., Dobson, R. J., Brown, M., Connell, J. M., Dominiczak, A., Lathrop, G. M., Webster, J., Farrall, M., Mein, C., Samani, N. J., Caulfield, M. J., Clayton, D. G., & Munroe, B. (2006). Linkage analysis using co-phenotypes in the BRIGHT study reveals novel potential susceptibility loci for hypertension. Am J Hum Genet, 79(2), 323-331 Abstract
Wang, N., Akey, J. M., Zhang, K., Chakraborty, R., & Jin, L. (2002). Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation. Am J Hum Genet, 71(5), 1227-1234 Abstract
Wang, T., & Elston, R. C. (2005). Two-level Haseman-Elston regression for general pedigree data analysis. Genet Epidemiol, 29(1), 12-22 Abstract
Watson, J. D., & Crick, F. H. (1953). Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature, 171(4356), 737-738 Abstract
Weale, M. E., Depondt, C., Macdonald, S. J., Smith, A., Lai, S., Shorvon, S. D., Wood, N. W., & Goldstein, D. B. (2003). Selection and evaluation of tagging SNPs in the neuronal-sodium-channel gene SCN1A: implications for linkage-disequilibrium gene mapping. Am J Hum Genet, 73(3), 551-565 Abstract
Weber, J. L., & May, E. (1989). Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet, 44(3), 388-396 Abstract
Weber, J. L., & Wong, C. (1993). Mutation of human short tandem repeats. Hum Mol Genet, 2(8), 1123-1128 Abstract
Weber, J. L., & Broman, K. W. (2001). Genotyping for human whole-genome scans: past, present, and future. Adv Genet, 42, 77-96 Abstract
Weeks, D. E., & Lange, K. (1988). The affected-pedigree-member method of linkage analysis. Am J Hum Genet, 42(2), 315-326 Abstract
Weeks, D. E., Sobel, E., O’Connell, J. R., & Lange, K. (1995). Computer programs for multilocus haplotyping of general pedigrees. Am J Hum Genet, 56(6), 1506-1507 Abstract
Weinberg, W. (1908). Über den Nachweis der Vererbung beim Menschen. Jh. Ver. Vaterlnat. Württemb., 64, 369-382
Weir, B. S. (1996). Genetic Data Analysis II. Sunderland, MA.: Sinauer.
Weiss, K. M., & Terwilliger, J. D. (2000). How many diseases does it take to map a gene with SNPs? Nat Genet, 26(2), 151-157 Abstract
Weiss, K. M., & Clark, A. G. (2002). Linkage disequilibrium and the mapping of complex human traits. Trends Genet, 18(1), 19-24 Abstract
Weiss, L. A., Pan, L., Abney, M., & Ober, C. (2006). The sex-specific genetic architecture of quantitative traits in humans. Nat Genet, 38(2), 218-222 Abstract
Weissenbach, J., Gyapay, G., Dib, C., Vignal, A., Morissette, J., Millasseau, P., Vaysseix, G., & Lathrop, M. (1992). A second-generation linkage map of the human genome. Nature, 359(6398), 794-801 Abstract
Whittemore, A. S., & Halpern, J. (1994). A class of tests for linkage using affected pedigree members. Biometrics, 50(1), 118-127 Abstract
Whittemore, A. S. (1996). Genome scanning for linkage: an overview. Am J Hum Genet, 59(3), 704-716 Abstract
Whittemore, A. S., & Halpern, J. (2006). Nonparametric linkage analysis using person-specific covariates. Genet Epidemiol, 30(5), 369-379 Abstract
Wiener, H., Elston, R. C., & Tiwari, H. K. (2003). X-linked extension of the revised Haseman-Elston algorithm for linkage analysis in sib pairs. Hum Hered, 55(2-3), 97-107 Abstract
Wigginton, J. E., & Abecasis, G. R. (2005). PEDSTATS: descriptive statistics, graphics and quality assessment for gene mapping data. Bioinformatics, 21(16), 3445-3447 Abstract
Wigginton, J. E., Cutler, D. J., & Abecasis, G. R. (2005). A note on exact tests of Hardy-Weinberg equilibrium. Am J Hum Genet, 76(5), 887-893 Abstract
Wigginton, J. E., & Abecasis, G. R. (2006). An evaluation of the replicate pool method: quick estimation of genome-wide linkage peak p-values. Genet Epidemiol, 30(4), 320-332 Abstract
Wijsman, E. M. (1987). A deductive method of haplotype analysis in pedigrees. Am J Hum Genet, 41(3), 356-373 Abstract
Williams, J. T., Duggirala, R., & Blangero, J. (1997). Statistical properties of a variance components method for quantitative trait linkage analysis in nuclear families and extended pedigrees. Genet Epidemiol, 14(6), 1065-1070 Abstract
Williams, J. T., & Blangero, J. (1999a). Comparison of variance components and sibpair-based approaches to quantitative trait linkage analysis in unselected samples. Genet Epidemiol, 16(2), 113-134 Abstract
Williams, J. T., & Blangero, J. (1999b). Power of variance component linkage analysis to detect quantitative trait loci. Ann Hum Genet, 63(Pt 6), 545-563 Abstract
Williams, J. T., Van Eerdewegh, P., Almasy, L., & Blangero, J. (1999). Joint multipoint linkage analysis of multivariate qualitative and quantitative traits. I. Likelihood formulation and simulation results. Am J Hum Genet, 65(4), 1134-1147 Abstract
Williams, J. T., & Blangero, J. (2004). Power of variance component linkage analysis-II. Discrete traits. Ann Hum Genet, 68(Pt 6), 620-632 Abstract
Wiltshire, S., Cardon, L. R., & McCarthy, M. I. (2002). Evaluating the results of genomewide linkage scans of complex traits by locus counting. Am J Hum Genet, 71(5), 1175-1182 Abstract
Winston, W. (1991). Operations Research: Applications and Algorithms. Boston, MA: PWS-Kent.
Witte, J. S., Gauderman, W. J., & Thomas, D. C. (1999). Asymptotic bias and efficiency in case-control studies of candidate genes and gene-environment interactions: basic family designs. Am J Epidemiol, 149(8), 693-705 Abstract
Witte, J. S., Elston, R. C., & Cardon, L. R. (2000). On the relative sample size required for multiple comparisons. Stat Med, 19(3), 369-372 Abstract
Wittke-Thompson, J. K., Pluzhnikov, A., & Cox, N. J. (2005). Rational inferences about departures from Hardy-Weinberg equilibrium. Am J Hum Genet, 76(6), 967-986 Abstract
Wonnacott, R. J., & Wonnacott, T. H. (1985). Introductory Statistics, 4th Edn.. Toronto: John Wiley & Sons.
Wray, N. R. (2005). Allele frequencies and the r2 measure of linkage disequilibrium: impact on design and interpretation of association studies. Twin Res Hum Genet, 8(2), 87-94 Abstract
Wright, F. A. (1997). The phenotypic difference discards sib-pair QTL linkage information. Am J Hum Genet, 60(3), 740-742 Abstract
Wright, M., De Geus, E., Ando, J., Luciano, M., Posthuma, D., Ono, Y., Hansell, N., Van Baal, C., Hiraishi, K., Hasegawa, T., Smith, G., Geffen, G., Geffen, L., Kanba, S., Miyake, A., Martin, N., & Boomsma, D. (2001). Genetics of cognition: outline of a collaborative twin study. Twin Res, 4(1), 48-56 Abstract
Wright, M. J., & Martin, N. (2004). Brisbane Adolescent Twin Study: outline of study methods and research projects. Aust. J. Psychol., 56, 65-78
Wright, S. (1921a). Systems of Mating. V. General Considerations. Genetics, 6(2), 167-178 Abstract
Wright, S. (1921b). Systems of Mating. IV. the Effects of Selection. Genetics, 6(2), 162-166 Abstract
Wright, S. (1921c). Systems of Mating. III. Assortative Mating Based on Somatic Resemblance. Genetics, 6(2), 144-161 Abstract
Wright, S. (1921d). Systems of Mating. II. the Effects of Inbreeding on the Genetic Composition of a Population. Genetics, 6(2), 124-143 Abstract
Wright, S. (1921e). Systems of Mating. I. the Biometric Relations between Parent and Offspring. Genetics, 6(2), 111-123 Abstract
Wu, C. C., Shete, S., & Amos, C. I. (2005). Linkage analysis of affected sib pairs allowing for parent-of-origin effects. Ann Hum Genet, 69(Pt 1), 113-126 Abstract
Xie, X., & Ott, J. (1993). Testing linkage disequilibrium between a disease gene and marker loci. Am J Hum Genet, 53, 1107
Xu, G. F., O’Connell, P., Viskochil, D., Cawthon, R., Robertson, M., Culver, M., Dunn, D., Stevens, J., Gesteland, R., White, R., & et al. (1990). The neurofibromatosis type 1 gene encodes a protein related to GA_Cell_, 62(3), 599-608 Abstract
Xu, X., Weiss, S., Xu, X., & Wei, L. J. (2000). A unified Haseman-Elston method for testing linkage with quantitative traits. Am J Hum Genet, 67(4), 1025-1028 Abstract
Yamazaki, T. (1977). The effects of overdominance of linkage in a multilocus system. Genetics, 86, 227-236
Yan, H., Papadopoulos, N., Marra, G., Perrera, C., Jiricny, J., Boland, C. R., Lynch, H. T., Chadwick, R. B., de la Chapelle, A., Berg, K., Eshleman, J. R., Yuan, W., Markowitz, S., Laken, S. J., Lengauer, C., Kinzler, K. W., & Vogelstein, B. (2000). Conversion of diploidy to haploidy. Nature, 403(6771), 723-724 Abstract
Young, J. I., & Zoghbi, H. Y. (2004). X-chromosome inactivation patterns are unbalanced and affect the phenotypic outcome in a mouse model of rett syndrome. Am J Hum Genet, 74(3), 511-520 Abstract
Yu, A., Zhao, C., Fan, Y., Jang, W., Mungall, A. J., Deloukas, P., Olsen, A., Doggett, N. A., Ghebranious, N., Broman, K. W., & Weber, J. L. (2001). Comparison of human genetic and sequence-based physical maps. Nature, 409(6822), 951-953 Abstract
Yu, X., Knott, S. A., & Visscher, M. (2004). Theoretical and empirical power of regression and maximum-likelihood methods to map quantitative trait loci in general pedigrees. Am J Hum Genet, 75(1), 17-26 Abstract
Zaykin, D. V., Westfall, H., Young, S. S., Karnoub, M. A., Wagner, M. J., & Ehm, M. G. (2002). Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals. Hum Hered, 53(2), 79-91 Abstract
Zaykin, D. V., Meng, Z., & Ehm, M. G. (2006). Contrasting linkage-disequilibrium patterns between cases and controls as a novel association-mapping method. Am J Hum Genet, 78(5), 737-746
Zhang, H., & Risch, N. (1996). Mapping quantitative-trait loci in humans by use of extreme concordant sib pairs: selected sampling by parental phenotypes. Am J Hum Genet, 59(4), 951-957 Abstract
Zhang, K., Calabrese, P., Nordborg, M., & Sun, F. (2002). Haplotype block structure and its applications to association studies: power and study designs. Am J Hum Genet, 71(6), 1386-1394 Abstract
Zhao, H. (2000). Family-based association studies. Stat Methods Med Res, 9(6), 563-587 Abstract
Zhao, H., Nettleton, D., Soller, M., & Dekkers, J. C. (2005). Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between markers and QTL. Genet Res, 86(1), 77-87 Abstract
Zhao, J. H., Lissarrague, S., Essioux, L., & Sham, C. (2002). GENECOUNTING: haplotype analysis with missing genotypes. Bioinformatics, 18(12), 1694-1695
Zhao, L. P., Li, S. S., & Khalid, N. (2003). A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies. Am J Hum Genet, 72(5), 1231-1250 Abstract
Zhao, X., Li, H., Shi, Y., Tang, R., Chen, W., Liu, J., Feng, G., Shi, J., Yan, L., Liu, H., & He, L. (2006). Significant association between the genetic variations in the 5’ end of the N-methyl-D-aspartate receptor subunit gene GRIN1 and schizophrenia. Biol Psychiatry, 59(8), 747-753 Abstract
Zheng, G., & Tian, X. (2005). The impact of diagnostic error on testing genetic association in case-control studies. Stat Med, 24(6), 869-882 Abstract
Zheng, G., Freidlin, B., & Gastwirth, J. L. (2006). Robust genomic control for association studies. Am J Hum Genet, 78(2), 350-356 Abstract
Zhu, G., Evans, D. M., Duffy, D. L., Montgomery, G. W., Medland, S. E., Gillespie, N. A., Ewen, K. R., Jewell, M., Liew, Y. W., Hayward, N. K., Sturm, R. A., Trent, J. M., & Martin, N. G. (2004). A genome scan for eye color in 502 twin families: most variation is due to a QTL on chromosome 15q. Twin Res, 7(2), 197-210 Abstract
Zollner, S., & Pritchard, J. K. (2005). Coalescent-based association mapping and fine mapping of complex trait loci. Genetics, 169(2), 1071-1092 Abstract
Zonderman, A. B. (1986). Twins, families, and the psychology of individual differences: the legacy of Steven G. Vandenberg. Behav Genet, 16(1), 11-24 Abstract
Zondervan, K. T., & Cardon, L. R. (2004). The complex interplay among factors that influence allelic association. Nat Rev Genet, 5(2), 89-100 Abstract